miRandb: a Resource of Online Services for miRNA Research, Aghaee-Bakhtiari SH, Arefian E, Lau P.Brief Bioinform. 2017 Jan 3. pii: bbw109. doi: 10.1093/bib/bbw109

miRNEST is an integrative collection of animal, plant and virus microRNA data. The database provides you with: a) microRNAs from our high-throughput

The annotation covers the hairpin structure of the pre-microRNAs, cross-species sequence comparison on each mature microRNA, reported disease relevance, and the experimentally validated gene targets, of which a gene regulation network was built for each entry. 2015-10-14 · miRBase provides the following services: The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Se hela listan på academic.oup.com Database of experimentally supported microRNA targets TarBase v7.0 is the largest available manually curated target database, indexing more than 65,000 miRNA-gene interactions, 16.5-175-fold more than any other available implementation. Se hela listan på academic.oup.com In bioinformatics, miRBase is a biological database that acts as an archive of microRNA sequences and annotations. As of September 2010 it contained information about 15,172 microRNAs.

Microrna database

PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms. The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature Stefano Pirrò 1 , Ivana Matic 1 , 2 , OncoMir Cancer Database is a repository that allows easy and systematic comparative genomic analyses of microRNA expression sequencing data derived from over 10,000 cancer patients with associated clinical information and organ-specific controls present in The Cancer Genome Atlas database. TransmiR is a database for transcription factor (TF)-microRNA (miRNA) regulations, through which one can find regulatory relations between TFs and miRNAs. In this major update to TransmiR v2.0, we manually curated 2,852 TF-miRNA regulations from 1,045 publications during 2013-2017 and included ChIP-seq-derived TF-miRNA regulation data. To reference information from this database, please cite one of the following papers: Agarwal V, Bell GW, Nam J, Bartel DP. Predicting effective microRNA target sites in mammalian mRNAs.

I am trying to use miRanda database ( http://www.microrna.org/), but this database is out of reach. Is that the same for you? Anyone knows the reason? or anyone knows a new address to access this

To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations. microRNA databases.

miRCancer : microRNA Cancer Association Database miRCancer provides comprehensive collection of microRNA (miRNA) expression profiles in various human

Welcome to PmiREN.

There are 8433 miRNAs collected from 121 plant species in PMRD, including model plants and major crops such as Arabidopsis, rice, wheat, soybean, maize, sorghum, barley, etc.

To reference information from this database, please cite one of the following papers: Agarwal V, Bell GW, Nam J, Bartel DP. Predicting effective microRNA target sites in mammalian mRNAs. eLife, 4:e05005, (2015).
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2018-08-14

News [June 21, 2018] The new version of miRbase (v22) is now available for MicroRNA Finder and Blast tools. [September 29, 2017] WMP was used in the validation of wheat miRNAs in the study conducted by Gasparis et al (2017). [January 10, 2017] Published wheat microRNA database is available now in MicroRNA Finder tool. [December 20, 2016] A new tool is implemented within WMP: MicroRNA Finder. 2018-08-14 miRBase: the microRNA database The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). From Wikipedia, the free encyclopedia This microRNA database and microRNA targets databases is a compilation of databases and web portals and servers used for microRNAs and their targets.